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User Preferences
Usage Format
License
Input File Formats

Data Taxonomy
Interconnection

Coordinate System
Layout
Partition
Abstraction
Arrangement

View Configurations
View
Scale
Focus

ABrowse

Cited by: 19

Paper Publication Year: 2012

License: open source

standalone app


linear multiple view multiple scale multiple focus


AliView

Cited by: 606

Paper Publication Year: 2014

License: open source

standalone app


linear single view single scale single focus


User Documentation Available

Alvis

Cited by: 3

Paper Publication Year: 2016

License: open source

standalone app


linear single view single scale single focus


User Documentation Available

BactoGenie

Cited by: 6

Paper Publication Year: 2015

License: unknown

standalone app


linear single view single scale single focus


CGView

Cited by: 471

Paper Publication Year: 2015

License: unknown

standalone app


circular single view single scale single focus


User Documentation Available

CGView Server

Cited by: 358

Paper Publication Year: 2008

License: unknown

web application


circular single view single scale single focus


Cinteny

Cited by: 134

Paper Publication Year: 2007

License: unknown

web application


linear single view single scale single focus


User Documentation Available

Circos

Cited by: 4459

Paper Publication Year: 2009

License: open source

standalone app


circular single view single scale single focus


User Documentation Available

Civi

Cited by: 17

Paper Publication Year: 2015

License: unknown

web application


circular single view single scale single focus


User Documentation Available

ClicO Free Service

Cited by: 35

Paper Publication Year: 2015

License: unknown

web application


circular single view single scale single focus


Combo

Cited by: 63

Paper Publication Year: 2006

License: unknown


linear single view single scale single focus


User Documentation Available

Dalliance

Cited by: 78

Paper Publication Year: 2011

License: open source

web application


linear single view single scale single focus


User Documentation Available

Deep Motif Dashboard

Cited by: 45

Paper Publication Year: 2017

License: open source

standalone app


linear single view single scale single focus


User Documentation Available

deepTools Heatmap

Cited by: 630

Paper Publication Year: 2016

License: open source

standalone app


linear multiple view single scale single focus


User Documentation Available

DNAPlotter

Cited by: 531

Paper Publication Year: 2009

License: open source

standalone app


linear circular single view single scale single focus


User Documentation Available

EaSeq

Cited by: 62

Paper Publication Year: 2016

License: unknown

standalone app


linear single view single scale single focus


User Documentation Available

Edgar Synteny Plots

Cited by: 1310

Paper Publication Year: 2016

License: unknown

web application


linear single view single scale single focus


User Documentation Available

Ensembl

Cited by: 1482

Paper Publication Year: 2002

License: open source

web application standalone app


linear multiple view multiple scale single focus


User Documentation Available

Galaxy HiCExplorer

Cited by: 7

Paper Publication Year: 2018

License: open source

web application


linear single view single scale single focus


User Documentation Available

GBrowse

Cited by: 127

Paper Publication Year: 2009

License: open source

standalone app


linear multiple view multiple scale single focus


User Documentation Available

GBrowse_syn

Cited by: 57

Paper Publication Year: 2010

License: open source

web application


linear multiple view multiple scale multiple focus


User Documentation Available

GenomeRing

Cited by: 45

Paper Publication Year: 2012

License: open source

standalone app


circular single view single scale single focus


User Documentation Available

GenomeView

Cited by: 107

Paper Publication Year: 2012

License: open source

web application standalone app


linear single view single scale single focus


User Documentation Available

GenPlay

Cited by: 22

Paper Publication Year: 2011

License: open source

standalone app


linear single view single scale single focus


User Documentation Available

Gepard

Cited by: 403

Paper Publication Year: 2007

License: open source

standalone app


linear single view single scale single focus


User Documentation Available

HilbertVis

Cited by: 65

Paper Publication Year: 2009

License: open source

programming library


spacefilling single view single scale single focus


User Documentation Available

HiPiler

Cited by: 13

Paper Publication Year: 2018

License: open source

web application


linear multiple view multiple scale multiple focus


User Documentation Available

HUGIn

Cited by: 31

Paper Publication Year: 2017

License: unknown

web application


linear single view single scale single focus


User Documentation Available

IGB

Cited by: 94

Paper Publication Year: 2016

License: open source

standalone app


linear multiple view multiple scale single focus


User Documentation Available

IRScope

Cited by: 14

Paper Publication Year: 2018

License: unknown

web application


linear single view single scale single focus


Island Viewer

Cited by: 244

Paper Publication Year: 2015

License: open source

web application


circular linear multiple view multiple scale multiple focus


J-Circos

Cited by: 30

Paper Publication Year: 2015

License: open source

standalone app


circular single view single scale single focus


User Documentation Available

JalView

Cited by: 4618

Paper Publication Year: 2009

License: open source

standalone app


linear single view single scale single focus


User Documentation Available

JBrowse

Cited by: 127

Paper Publication Year: 2016

License: open source

web application standalone app


linear single view single scale single focus


User Documentation Available

JuiceBox

Cited by: 189

Paper Publication Year: 2016

License: open source

standalone app


linear single view single scale single focus


User Documentation Available

Juiceboxjs

Cited by: 17

Paper Publication Year: 2018

License: open source

programming language


linear multiple view multiple scale single focus


User Documentation Available

Lollipop Plot cBio

Cited by: 4710

Paper Publication Year: 2012

License: unknown

web application


linear single view single scale single focus


MAGI

Cited by: 16

Paper Publication Year: 2015

License: open source

web application


linear multiple view single scale single focus


MEXPRESS

Cited by: 55

Paper Publication Year: 2015

License: open source

web application


linear single view single scale single focus


User Documentation Available

MGcV

Cited by: 45

Paper Publication Year: 2013

License: unknown

web application


linear single view single scale single focus


User Documentation Available

MizBee

Cited by: 142

Paper Publication Year: 2009

License: open source

standalone app


linear circular multiple view multiple scale single focus


User Documentation Available

MochiView

Cited by: 106

Paper Publication Year: 2010

License: open source

standalone app


linear multiple view multiple scale single focus


User Documentation Available

MSAViewer

Cited by: 71

Paper Publication Year: 2016

License: open source

standalone app web application


linear single view single scale single focus


User Documentation Available

my5c

Cited by: 84

Paper Publication Year: 2009

License: unknown

web application


linear multiple view multiple scale single focus


NCBI Genome Viewer

Cited by: 1429

Paper Publication Year: 2017

License: unknown

web application


linear single view single scale single focus


User Documentation Available

ngs.plot

Cited by: 351

Paper Publication Year: 2014

License: open source

programming language


linear multiple view single scale multiple focus


User Documentation Available

Persephone

Cited by: 0

Paper Publication Year: 2007

License: commercial

standalone app


linear multiple view multiple scale multiple focus


pLogo

Cited by: 137

Paper Publication Year: 2013

License: unknown

web application


linear single view single scale single focus


User Documentation Available

ReadXplorer

Cited by: 74

Paper Publication Year: 2014

License: open source

standalone app


linear single view single scale single focus


User Documentation Available

Rondo

Cited by: 104

Paper Publication Year: 2016

License: unknown

web application


circular single view single scale single focus


User Documentation Available

Sashimi Plot

Cited by: 8

Paper Publication Year: 2015

License: open source

web application


linear single view single scale single focus


User Documentation Available

Savant Genome Browser 2

Cited by: 60

Paper Publication Year: 2012

License: open source

web application


linear multiple view single scale single focus


Sequence Bundles

Cited by: 7

Paper Publication Year: 2014

License: open source

web application


linear single view single scale single focus


User Documentation Available

SpliceGrapher

Cited by: 103

Paper Publication Year: 2012

License: unknown

standalone app


linear single view single scale single focus


User Documentation Available

SplicePlot

Cited by: 11

Paper Publication Year: 2013

License: unknown

standalone app


linear single view single scale single focus


User Documentation Available

SpliceSeq

Cited by: 81

Paper Publication Year: 2012

License: open source

standalone app


linear single view single scale single focus


User Documentation Available

SynMap2

Cited by: 21

Paper Publication Year: 2017

License: open source

web application


linear single view single scale single focus


User Documentation Available

Synteny Explorer

Cited by: 4

Paper Publication Year: 2016

License: open source

web application


linear multiple view single scale single focus


Two Sample Logo

Cited by: 279

Paper Publication Year: 2006

License: open source

standalone app


linear single view single scale single focus


User Documentation Available

UCSC Genome Browser

Cited by: 6940

Paper Publication Year: 2002

License: unknown

web application


linear single view single scale single focus


User Documentation Available

Variant View

Cited by: 24

Paper Publication Year: 2013

License: open source

standalone app


linear single view single scale single focus


User Documentation Available

Vials

Cited by: 11

Paper Publication Year: 2016

License: unknown

web application


linear single view single scale single focus


Vista Dot

Cited by: 1310

Paper Publication Year: 2004

License: unknown

web application


linear single view single scale single focus


User Documentation Available

Vista Synteny

Cited by: 1310

Paper Publication Year: 2004

License: unknown

web application


linear multiple view single scale single focus


User Documentation Available

VistaPoint

Cited by: 889

Paper Publication Year: 2000

License: unknown

web application


linear single view single scale single focus


User Documentation Available

WashU Epigenome Browser

Cited by: 191

Paper Publication Year: 2011

License: open source

web application


linear single view single scale single focus


User Documentation Available

WebLogo

Cited by: 7486

Paper Publication Year: 2004

License: open source

web application


linear single view single scale single focus


Xena

Cited by: 35

Paper Publication Year: 2018

License: open source

web application


linear multiple view multiple scale multiple focus


User Documentation Available