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Scales

Single Scale




Single scale visualizations display a genome from a single perspective - one size. However, some single scale visualizations provide a zooming interaction, which allows the user to expand or shrink the genome view.




3D Genome Browser 3dViewer AliView Alvis Apollo BactoGenie BedSect CGView CGView Server Cinteny Circos Civi ClicO Free Service CNVkit Combo CRISPResso2 Dalliance Deep Motif Dashboard deepTools Heatmap DNAPlotter EaSeq Edgar Genome Browser Edgar Synteny Plots EnrichedHeatmap EpiViz Galaxy HiCExplorer GenomeRing GenomeView genoPlotR GenPlay Gepard ggBio GView HilbertCurve HilbertVis HUGIn IRScope J-Circos JalView JBrowse JuiceBox Lollipop Plot cBio MAGI MEXPRESS MGcV MicroScope MSAViewer NCBI Genome Viewer ngs.plot Oviz-Bio pLogo PSU 3D Genome Browser ReadXplorer RIdeogram Rondo Sashimi Plot Savant Genome Browser 2 SCGV Sequence Bundles Sequence Surveyor Spatial DB SpliceGrapher SplicePlot SpliceSeq svist4get SWAV SynMap2 SynteBase and SynteView Synteny Explorer TFmotifView Two Sample Logo UCSC Genome Browser Variant View VCF Plotein Vials Vista Dot Vista Synteny VistaPoint WashU Epigenome Browser WebLogo


Multiple Scales




A multiple scale visualization allows for visualizing data from multiple perspectives/sizes at once. This can be useful for something as large as a genome, particularly being able to view individual genes as well as the geneome on a whole, as scaling would allow.




ABrowse Cooler CRAMER Ensembl GBrowse GBrowse_syn GIVE Gremlin HiGlass HiPiler IGB Integrative Genomics Viewer Island Viewer Juiceboxjs MEME MizBee MochiView my5c NCBI Sequence Viewer Persephone SilkDB 3.0 trackViewer Xena