EpiViz

http://epiviz.cbcb.umd.edu/4/?ws=Ago25FdPLVb&seqName=chr2&start=69300680&end=90699322&settings=default&useCookie=true&

Methods

linear single view single scale single focus segregated no abstraction no arrangement no interconnection segment sparse type segment contiguous type point sparse type point contiguous type

Tool

Access Format: web application Access Format: standalone app Access Format: programming library Supported Files: other License: Artistic License

Paper

Epiviz: interactive visual analytics for functional genomics data

Chelaru F, Smith L, Goldstein N, Bravo HC. Epiviz: interactive visual analytics for functional genomics data. Nat Methods. nature.com; 2014;11: 938–940.

Cited by: 47

Abstract

Visualization is an integral aspect of genomics data analysis where the output of procedures performed in computing environments like Bioconductor is often visualized. Algorithmic-statistical analysis and interactive visualization are usually disjoint but are most effective when used iteratively. We introduce tools that provide this tight-knit integration: Epiviz (http://epiviz.cbcb.umd.edu), a web-based genome browser, and the Epivizr Bioconductor package allowing interactive, extensible and reproducible visualization within a state-of-the-art data analysis platform.