We characterize a view as a set of one or multiple aligned tracks, with at most one two-axis track. In a single view, we cannot visualize multiple scales and foci.
3D Genome Browser 3dViewer AliView Alvis BactoGenie CGView CGView Server Cinteny Circos Civi ClicO Free Service Combo Dalliance Deep Motif Dashboard DNAPlotter EaSeq Edgar Circular Plot Edgar Synteny Plots EpiViz Galaxy HiCExplorer GenomeRing GenomeView GenPlay Gepard GView HilbertCurve HilbertVis HUGIn IRScope J-Circos JalView JBrowse JuiceBox Lollipop Plot cBio MEXPRESS MGcV MSAViewer NCBI Genome Viewer pLogo PSU 3D Genome Browser ReadXplorer Rondo Sashimi Plot Sequence Bundles SpliceGrapher SplicePlot SpliceSeq SynMap2 SynteBase and SynteView Two Sample Logo UCSC Genome Browser Variant View Vials Vista Dot VistaPoint WashU Epigenome Browser WebLogo
Multiple views allow for visualizations with multiple scales and foci. Multiple views can be (i) independent, (ii) weakly linked, (iii) medium linked or (iv) strongly linked. While independent views are not connected in any way, weakly linked views are linked by brushing and linking. Medium linked views share navigation, for example two views are at different scales, but zooming always affects both. Strongly linked views share genomic coordinates at one axis and can also share tracks that are aligned to the axis.
ABrowse CEpBrowser deepTools Heatmap Edgar Genome Browser Edgar Synteny Matrix EnrichedHeatmap Ensembl GBrowse GBrowse_syn GIVE Gremlin HiGlass HiPiler IGB Integrative Genomics Viewer Island Viewer Juiceboxjs MAGI MEME MizBee MochiView my5c NCBI Sequence Viewer ngs.plot Persephone Savant Genome Browser 2 Sequence Surveyor Synteny Explorer Vista Synteny Xena