Views

Single View

We characterize a view as a set of one or multiple aligned tracks, with at most one two-axis track. In a single view, we cannot visualize multiple scales and foci.

3D Genome Browser

3dViewer

AliView

Alvis

BactoGenie

CGView

CGView Server

Cinteny

Circos

Civi

ClicO Free Service

CNVkit

Combo

CRISPResso2

Dalliance

Deep Motif Dashboard

DNAPlotter

EaSeq

Edgar Synteny Plots

EpiViz

Galaxy HiCExplorer

GenomeRing

GenomeView

genoPlotR

GenPlay

Gepard

GView

HilbertCurve

HilbertVis

HUGIn

IRScope

J-Circos

JalView

JBrowse

JuiceBox

Lollipop Plot cBio

MEXPRESS

MGcV

MSAViewer

NCBI Genome Viewer

pLogo

PSU 3D Genome Browser

ReadXplorer

RIdeogram

Rondo

Sashimi Plot

Sequence Bundles

Spatial DB

SpliceGrapher

SplicePlot

SpliceSeq

svist4get

SynMap2

SynteBase and SynteView

TFmotifView

Two Sample Logo

UCSC Genome Browser

Variant View

VCF Plotein

Vials

Vista Dot

VistaPoint

WashU Epigenome Browser

WebLogo

Multiple Views

Multiple views allow for visualizations with multiple scales and foci. Multiple views can be (i) independent, (ii) weakly linked, (iii) medium linked or (iv) strongly linked. While independent views are not connected in any way, weakly linked views are linked by brushing and linking. Medium linked views share navigation, for example two views are at different scales, but zooming always affects both. Strongly linked views share genomic coordinates at one axis and can also share tracks that are aligned to the axis.

ABrowse