pLogo

https://www.nature.com/articles/nmeth.2646/figures/1

Methods

linear single view single scale single focus contiguous no abstraction no arrangement no interconnection point contiguous type

Tool

Access Format: web application Supported Files: fasta License: unavailable

Paper

pLogo: a probabilistic approach to visualizing sequence motifs

O’Shea JP, Chou MF, Quader SA, Ryan JK, Church GM, Schwartz D. pLogo: a probabilistic approach to visualizing sequence motifs. Nat Methods. Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved.; 2013;10: 1211.

Cited by: 137

Abstract

Methods for visualizing protein or nucleic acid motifs have traditionally relied upon residue frequencies to graphically scale character heights. We describe the pLogo, a motif visualization in which residue heights are scaled relative to their statistical significance. A pLogo generation tool is publicly available at http://plogo.uconn.edu/ and supports real-time conditional probability calculations and visualizations.