svist4get

https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2706-8/figures/1

Methods

linear single view single scale single focus contiguous no abstraction linear parallel arrangement no interconnection segment contiguous type

Tool

Access Format: standalone app Supported Files: other

Paper

svist4get: a simple visualization tool for genomic tracks from sequencing experiments

Egorov, A.A., Sakharova, E.A., Anisimova, A.S. et al. svist4get: a simple visualization tool for genomic tracks from sequencing experiments. BMC Bioinformatics 20, 113 (2019). https://doi.org/10.1186/s12859-019-2706-8

Cited by: 0

Abstract

High-throughput sequencing often provides a foundation for experimental analyses in the life sciences. For many such methods, an intermediate layer of bioinformatics data analysis is the genomic signal track constructed by short read mapping to a particular genome assembly. There are many software tools to visualize genomic tracks in a web browser or with a stand-alone graphical user interface. However, there are only few command-line applications suitable for automated usage or production of publication-ready visualizations.