JuiceBox

https://www.aidenlab.org/juicebox/

Methods

linear single view single scale single focus contiguous no abstraction no arrangement within interconnection segment sparse type segment contiguous type point sparse type point contiguous type

Tool

Access Format: standalone app Supported Files: fasta Supported Files: other License: MIT

Paper

Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom.

Durand NC, Robinson JT, Shamim MS, Machol I, Mesirov JP, Lander ES, et al. Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom. Cell Syst. Elsevier; 2016;3: 99–101.

Cited by: 189

Abstract

Hi-C experiments study how genomes fold in 3D, generating contact maps containing features as small as 20 bp and as large as 200 Mb. Here we introduce Juicebox, a tool for exploring Hi-C and other contact map data. Juicebox allows users to zoom in and out of Hi-C maps interactively, just as a user of Google Earth might zoom in and out of a geographic map. Maps can be compared to one another, or to 1D tracks or 2D feature sets.