3D Genome Browser i Paper Publication Year: 2015 License: unknown web application spatial single view single scale single focus User Documentation Available 3dViewer i Paper Publication Year: 2017 License: unknown web application standalone app spatial single view single scale single focus User Documentation Available ABrowse i Paper Publication Year: 2012 License: open source standalone app linear multiple view multiple scale multiple focus AliView i Paper Publication Year: 2014 License: open source standalone app linear single view single scale single focus User Documentation Available Alvis i Paper Publication Year: 2016 License: open source standalone app linear single view single scale single focus User Documentation Available Apollo i Paper Publication Year: 2019 License: open source web application linear multiple view single scale single focus User Documentation Available BactoGenie i Paper Publication Year: 2015 License: unknown standalone app linear single view single scale single focus BedSect i Paper Publication Year: 2020 License: open source web application linear multiple view single scale single focus User Documentation Available CEpBrowser i Paper Publication Year: 2013 License: unknown web application linear multiple view multiple scale single scale multiple focus single focus User Documentation Available CGView i Paper Publication Year: 2015 License: unknown standalone app circular single view single scale single focus User Documentation Available CGView Server i Paper Publication Year: 2008 License: unknown web application circular single view single scale single focus Cinteny i Paper Publication Year: 2007 License: unknown web application linear single view single scale single focus User Documentation Available Circos i Paper Publication Year: 2009 License: open source standalone app circular single view single scale single focus User Documentation Available Civi i Paper Publication Year: 2015 License: unknown web application circular single view single scale single focus User Documentation Available ClicO Free Service i Paper Publication Year: 2015 License: unknown web application circular single view single scale single focus CNVkit i Paper Publication Year: 2016 License: open source “programming library” linear single view single scale single focus User Documentation Available Combo i Paper Publication Year: 2006 License: unknown linear single view single scale single focus User Documentation Available Cooler i Paper Publication Year: 2020 License: open source programming library linear multiple view multiple scale multiple focus User Documentation Available CRAMER i Paper Publication Year: 2020 License: open source “programming library” linear multiple view multiple scale multiple focus User Documentation Available CRISPResso2 i Paper Publication Year: 2019 License: open source “web application” “standalone app” linear single view single scale single focus User Documentation Available Dalliance i Paper Publication Year: 2011 License: open source web application linear single view single scale single focus User Documentation Available Deep Motif Dashboard i Paper Publication Year: 2017 License: open source standalone app linear single view single scale single focus User Documentation Available deepTools Heatmap i Paper Publication Year: 2016 License: open source standalone app linear multiple view single scale single focus User Documentation Available DNAPlotter i Paper Publication Year: 2009 License: open source standalone app linear circular single view single scale single focus User Documentation Available EaSeq i Paper Publication Year: 2016 License: unknown standalone app linear single view single scale single focus User Documentation Available Edgar Genome Browser i Paper Publication Year: 2016 License: unknown web application linear circular multiple view single scale single focus User Documentation Available Edgar Synteny Plots i Paper Publication Year: 2016 License: unknown web application linear single view single scale single focus User Documentation Available EnrichedHeatmap i Paper Publication Year: 2018 License: open source programming language linear multiple view single scale single focus User Documentation Available Ensembl i Paper Publication Year: 2002 License: open source web application standalone app linear multiple view multiple scale single focus User Documentation Available EpiViz i Paper Publication Year: 2014 License: open source web application standalone app programming library linear single view single scale single focus User Documentation Available Galaxy HiCExplorer i Paper Publication Year: 2018 License: open source web application linear single view single scale single focus User Documentation Available GBrowse i Paper Publication Year: 2009 License: open source standalone app linear multiple view multiple scale single focus User Documentation Available GBrowse_syn i Paper Publication Year: 2010 License: open source web application linear multiple view multiple scale multiple focus User Documentation Available Geneious i Paper Publication Year: 2005 License: commercial standalone app linear circular “single” view “multiple” view “single” scale “multiple” scale “single” focus “multiple” focus User Documentation Available Genome Annotator Light (GAL) i Paper Publication Year: 2019 License: open source standalone app linear multiple view single scale single focus User Documentation Available GenomeRing i Paper Publication Year: 2012 License: open source standalone app circular single view single scale single focus User Documentation Available GenomeView i Paper Publication Year: 2012 License: open source web application standalone app linear single view single scale single focus User Documentation Available genoPlotR i Paper Publication Year: 2010 License: open source “programming library” linear single view single scale single focus User Documentation Available GenPlay i Paper Publication Year: 2011 License: open source standalone app linear single view single scale single focus User Documentation Available Gepard i Paper Publication Year: 2007 License: open source standalone app linear single view single scale single focus User Documentation Available ggBio i Paper Publication Year: 2012 License: open source programming library linear circular single view multiple view single scale single focus User Documentation Available GIVE i Paper Publication Year: 2018 License: open source web application programming library linear multiple view multiple scale single focus User Documentation Available Gosling i Paper Publication Year: 2021 License: open source web application programming library linear circular single view multiple view single scale multiple scale single focus multiple focus User Documentation Available Gremlin i Paper Publication Year: 2010 License: unknown web application standalone app linear multiple view multiple scale single focus User Documentation Available GView i Paper Publication Year: 2010 License: open source web application programming library linear circular single view single scale single focus User Documentation Available HiGlass i Paper Publication Year: 2018 License: open source web application programming library linear multiple view multiple scale multiple focus User Documentation Available HilbertCurve i Paper Publication Year: 2016 License: open source programming library spacefilling single view single scale single focus User Documentation Available HilbertVis i Paper Publication Year: 2009 License: open source programming library spacefilling single view single scale single focus User Documentation Available HiPiler i Paper Publication Year: 2018 License: open source web application linear multiple view multiple scale multiple focus User Documentation Available HUGIn i Paper Publication Year: 2017 License: unknown web application linear single view single scale single focus User Documentation Available IGB i Paper Publication Year: 2016 License: open source standalone app linear multiple view multiple scale single focus User Documentation Available Integrative Genomics Viewer i Paper Publication Year: 2013 License: open source web application standalone app linear multiple view multiple scale multiple focus User Documentation Available IRScope i Paper Publication Year: 2018 License: unknown web application linear single view single scale single focus Island Viewer i Paper Publication Year: 2015 License: open source web application linear circular multiple view multiple scale multiple focus J-Circos i Paper Publication Year: 2015 License: open source standalone app circular single view single scale single focus User Documentation Available JalView i Paper Publication Year: 2009 License: open source standalone app linear single view single scale single focus User Documentation Available JBrowse i Paper Publication Year: 2016 License: open source web application standalone app linear single view single scale single focus User Documentation Available JuiceBox i Paper Publication Year: 2016 License: open source standalone app linear single view single scale single focus User Documentation Available Juiceboxjs i Paper Publication Year: 2018 License: open source programming language linear multiple view multiple scale single focus User Documentation Available Lollipop Plot cBio i Paper Publication Year: 2012 License: unknown web application linear single view single scale single focus MAGI i Paper Publication Year: 2015 License: open source web application linear multiple view single scale single focus MEME i Paper Publication Year: 2006 License: unknown web application standalone app linear multiple view multiple scale single focus User Documentation Available MEXPRESS i Paper Publication Year: 2015 License: open source web application linear single view single scale single focus User Documentation Available MGcV i Paper Publication Year: 2013 License: unknown web application linear single view single scale single focus User Documentation Available MicroScope i Paper Publication Year: 2020 License: open source web application linear circular multiple view single scale single focus User Documentation Available MizBee i Paper Publication Year: 2009 License: open source standalone app linear circular multiple view multiple scale single focus User Documentation Available MochiView i Paper Publication Year: 2010 License: open source standalone app linear multiple view multiple scale single focus User Documentation Available MSAViewer i Paper Publication Year: 2016 License: open source standalone app web application linear single view single scale single focus User Documentation Available my5c i Paper Publication Year: 2009 License: unknown web application linear multiple view multiple scale single focus NCBI Genome Viewer i Paper Publication Year: 2017 License: unknown web application linear single view single scale single focus User Documentation Available NCBI Sequence Viewer i Paper Publication Year: 2007 License: unknown web application linear multiple view multiple scale multiple focus User Documentation Available ngs.plot i Paper Publication Year: 2014 License: open source programming language linear multiple view single scale multiple focus User Documentation Available Oviz-Bio i Paper Publication Year: 2020 License: open source web application linear multiple view single scale single focus User Documentation Available Persephone i Paper Publication Year: 2007 License: commercial standalone app linear multiple view multiple scale multiple focus pLogo i Paper Publication Year: 2013 License: unknown web application linear single view single scale single focus User Documentation Available PSU 3D Genome Browser i Paper Publication Year: 2018 License: unknown web application linear single view single scale single focus User Documentation Available ReadXplorer i Paper Publication Year: 2014 License: open source standalone app linear single view single scale single focus User Documentation Available RIdeogram i Paper Publication Year: 2020 License: open source standalone app linear single view single scale single focus User Documentation Available Rondo i Paper Publication Year: 2016 License: unknown web application circular single view single scale single focus User Documentation Available Sashimi Plot i Paper Publication Year: 2015 License: open source web application linear single view single scale single focus User Documentation Available Savant Genome Browser 2 i Paper Publication Year: 2012 License: open source web application linear multiple view single scale single focus SCGV i Paper Publication Year: 2020 License: open programming library linear multiple view single scale single focus Sequence Bundles i Paper Publication Year: 2014 License: open source web application linear single view single scale single focus User Documentation Available Sequence Surveyor i Paper Publication Year: 2011 License: unknown standalone app linear multiple view single scale single focus User Documentation Available SilkDB 3.0 i Paper Publication Year: 2020 License: open source web application linear multiple view multiple scale multiple focus User Documentation Available Spatial DB i Paper Publication Year: 2020 License: open source web application linear single view single scale single focus User Documentation Available SpliceGrapher i Paper Publication Year: 2012 License: unknown standalone app linear single view single scale single focus User Documentation Available SplicePlot i Paper Publication Year: 2013 License: unknown standalone app linear single view single scale single focus User Documentation Available SpliceSeq i Paper Publication Year: 2012 License: open source standalone app linear single view single scale single focus User Documentation Available svist4get i Paper Publication Year: 2019 License: open source standalone app linear single view single scale single focus User Documentation Available SWAV i Paper Publication Year: 2020 License: open source web application linear multiple view single scale single focus User Documentation Available SynMap2 i Paper Publication Year: 2017 License: open source web application linear single view single scale single focus User Documentation Available SynteBase and SynteView i Paper Publication Year: 2008 License: unknown web application standalone app linear single view single scale single focus User Documentation Available Synteny Explorer i Paper Publication Year: 2016 License: open source web application linear multiple view single scale single focus TFmotifView i Paper Publication Year: 2020 License: open source web application linear single view single scale single focus User Documentation Available trackViewer i Paper Publication Year: 2019 License: open source' “programming library” linear multiple view multiple scale multiple focus User Documentation Available Two Sample Logo i Paper Publication Year: 2006 License: open source standalone app linear single view single scale single focus User Documentation Available UCSC Genome Browser i Paper Publication Year: 2002 License: unknown web application linear single view single scale single focus User Documentation Available Variant View i Paper Publication Year: 2013 License: open source standalone app linear single view single scale single focus User Documentation Available VCF Plotein i Paper Publication Year: 2019 License: open source web application linear single view single scale single focus User Documentation Available Vials i Paper Publication Year: 2016 License: unknown web application linear single view single scale single focus Vista Dot i Paper Publication Year: 2004 License: unknown web application linear single view single scale single focus User Documentation Available Vista Synteny i Paper Publication Year: 2004 License: unknown web application linear multiple view single scale single focus User Documentation Available VistaPoint i Paper Publication Year: 2000 License: unknown web application linear single view single scale single focus User Documentation Available WashU Epigenome Browser i Paper Publication Year: 2011 License: open source web application linear single view single scale single focus User Documentation Available WebLogo i Paper Publication Year: 2004 License: open source web application linear single view single scale single focus Xena i Paper Publication Year: 2018 License: open source web application linear multiple view multiple scale multiple focus User Documentation Available
