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Views
Single Views
We characterize a view as a set of one or multiple aligned tracks, with at most one two-axis track. In a single view, we cannot visualize multiple scales and foci.
66 tools
3D Genome Browser
3dViewer
AliView
Alvis
BactoGenie
CGView
CGView Server
Cinteny
Circos
Civi
ClicO Free Service
CNVkit
Combo
CRISPResso2
Dalliance
Deep Motif Dashboard
DNAPlotter
EaSeq
Edgar Synteny Plots
EpiViz
Galaxy HiCExplorer
GenomeRing
GenomeView
genoPlotR
GenPlay
Gepard
ggBio
Gosling
GView
HilbertCurve
HilbertVis
HUGIn
IRScope
J-Circos
JalView
JBrowse
JuiceBox
Lollipop Plot cBio
MEXPRESS
MGcV
MSAViewer
NCBI Genome Viewer
pLogo
PSU 3D Genome Browser
ReadXplorer
RIdeogram
Rondo
Sashimi Plot
Sequence Bundles
Spatial DB
SpliceGrapher
SplicePlot
SpliceSeq
svist4get
SynMap2
SynteBase and SynteView
TFmotifView
Two Sample Logo
UCSC Genome Browser
Variant View
VCF Plotein
Vials
Vista Dot
VistaPoint
WashU Epigenome Browser
WebLogo
Multiple Views
Multiple views allow for visualizations with multiple scales and foci. Multiple views can be (i) independent, (ii) weakly linked, (iii) medium linked or (iv) strongly linked. While independent views are not connected in any way, weakly linked views are linked by brushing and linking. Medium linked views share navigation, for example two views are at different scales, but zooming always affects both. Strongly linked views share genomic coordinates at one axis and can also share tracks that are aligned to the axis.
42 tools