JuiceBox

https://www.aidenlab.org/juicebox/

Methods

linear single view single scale single focus contiguous no abstraction no arrangement within interconnection segment sparse type segment contiguous type point sparse type point contiguous type

Tool

Access Format standalone app
Supported Files fasta other
License MIT
Tool name

JuiceBox
Tool Link https://www.aidenlab.org/juicebox/
Documentation https://github.com/aidenlab/Juicebox/wiki

Paper

Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom.

Durand NC, Robinson JT, Shamim MS, Machol I, Mesirov JP, Lander ES, et al. Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom. Cell Syst. Elsevier; 2016;3: 99–101.

Abstract

Hi-C experiments study how genomes fold in 3D, generating contact maps containing features as small as 20 bp and as large as 200 Mb. Here we introduce Juicebox, a tool for exploring Hi-C and other contact map data. Juicebox allows users to zoom in and out of Hi-C maps interactively, just as a user of Google Earth might zoom in and out of a geographic map. Maps can be compared to one another, or to 1D tracks or 2D feature sets.