DNAPlotter

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2612626/figure/F1/

Methods

linear circular single view single scale single focus contiguous no abstraction no arrangement no interconnection segment sparse type segment contiguous type point sparse type point contiguous type

Tool

Access Format standalone app
Supported Files other
License GPL
Tool name

DNAPlotter
Tool Link https://www.sanger.ac.uk/science/tools/dnaplotter
Documentation http://sanger-pathogens.github.io/Artemis/DNAPlotter/

Paper

DNAPlotter: circular and linear interactive genome visualization.

Carver T, Thomson N, Bleasby A, Berriman M, Parkhill J. DNAPlotter: circular and linear interactive genome visualization. Bioinformatics. academic.oup.com; 2009;25: 119–120.

Abstract

DNAPlotter is an interactive Java application for generating circular and linear representations of genomes. Making use of the Artemis libraries to provide a user-friendly method of loading in sequence files (EMBL, GenBank, GFF) as well as data from relational databases, it filters features of interest to display on separate user-definable tracks. It can be used to produce publication quality images for papers or web pages., , AVAILABILITY: DNAPlotter is freely available (under a GPL licence) for download (for MacOSX, UNIX and Windows) at the Wellcome Trust Sanger Institute web sites: http://www.sanger.ac.uk/Software/Artemis/circular/