JalView

https://www.youtube.com/watch?time_continue=61&v=RdbcdZZUDHg

Methods

linear single view single scale single focus segregated no abstraction no arrangement no interconnection segment sparse type segment contiguous type point sparse type point contiguous type

Tool

Access Format standalone app
Supported Files fasta other
License GPL
Tool name

JalView
Tool Link http://www.jalview.org/
Documentation http://www.jalview.org/Help/Getting-Started

Paper

Jalview Version 2--a multiple sequence alignment editor and analysis workbench.

Waterhouse AM, Procter JB, Martin DMA, Clamp M, Barton GJ. Jalview Version 2—a multiple sequence alignment editor and analysis workbench. Bioinformatics. Oxford University Press; 2009;25: 1189–1191.

Abstract

Jalview Version 2 is a system for interactive WYSIWYG editing, analysis and annotation of multiple sequence alignments. Core features include keyboard and mouse-based editing, multiple views and alignment overviews, and linked structure display with Jmol. Jalview 2 is available in two forms: a lightweight Java applet for use in web applications, and a powerful desktop application that employs web services for sequence alignment, secondary structure prediction and the retrieval of alignments, sequences, annotation and structures from public databases and any DAS 1.53 compliant sequence or annotation server. AVAILABILITY: The Jalview 2 Desktop application and JalviewLite applet are made freely available under the GPL, and can be downloaded from www.jalview.org.