Genome Annotator Light (GAL)

https://github.com/computational-genomics-lab/GAL/blob/master/User_Guide_Latest.pdf

Methods

linear multiple view single scale single focus contiguous no abstraction linear parallel arrangement no interconnection segment sparse type point contiguous type point sparse type segment contiguous type

Tool

Access Format standalone app
Supported Files fasta other
License Creative Commons Attribution License
Tool name

Genome Annotator Light (GAL)
Tool Link https://github.com/computational-genomics-lab/GAL
Documentation https://github.com/computational-genomics-lab/GAL/blob/master/User_Guide_Latest.pdf

Paper

Genome Annotator Light (GAL): A Docker-based package for genome analysis and visualization

Panda, Arijit, Narendrakumar M. Chaudhari, and Sucheta Tripathy. Genome Annotator Light (GAL): A Docker-based package for genome analysis and visualization. Genomics 112.1 (2020): 127-134.

Abstract

Next generation sequencing techniques produce enormous data but its analysis and visualization remains a big challenge. To address this, we have developed Genome Annotator Light(GAL), a Docker based package for genome analysis and data visualization. GAL integrated several existing tools and in-house programs inside a Docker Container for systematic analysis and visualization of genomes through web browser. GAL takes varieties of input types ranging from raw Fasta files to fully annotated files, processes them through a standard annotation pipeline and visualizes on a web browser. Comparative genomic analysis is performed automatically within a given taxonomic class. GAL creates interactive genome browser with clickable genomic feature tracks; local BLAST-able database; query page, on-fly downstream data analysis using EMBOSS etc. Overall, GAL is an extremely convenient, portable and platform independent. Fully integrated web-resources can be easily created and deployed, e.g. www.eumicrobedb.org/cglab, for our in-house genomes. GAL is freely available at https://hub.docker.com/u/cglabiicb/.