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Scales
Single Scale
Single scale visualizations display a genome from a single perspective - one size. However, some single scale visualizations provide a zooming interaction, which allows the user to expand or shrink the genome view.
83 tools
3D Genome Browser
3dViewer
AliView
Alvis
Apollo
BactoGenie
BedSect
CEpBrowser
CGView
CGView Server
Cinteny
Circos
Civi
ClicO Free Service
CNVkit
Combo
CRISPResso2
Dalliance
Deep Motif Dashboard
deepTools Heatmap
DNAPlotter
EaSeq
Edgar Genome Browser
Edgar Synteny Plots
EnrichedHeatmap
EpiViz
Galaxy HiCExplorer
Genome Annotator Light (GAL)
GenomeRing
GenomeView
genoPlotR
GenPlay
Gepard
ggBio
Gosling
GView
HilbertCurve
HilbertVis
HUGIn
IRScope
J-Circos
JalView
JBrowse
JuiceBox
Lollipop Plot cBio
MAGI
MEXPRESS
MGcV
MicroScope
MSAViewer
NCBI Genome Viewer
ngs.plot
Oviz-Bio
pLogo
PSU 3D Genome Browser
ReadXplorer
RIdeogram
Rondo
Sashimi Plot
Savant Genome Browser 2
SCGV
Sequence Bundles
Sequence Surveyor
Spatial DB
SpliceGrapher
SplicePlot
SpliceSeq
svist4get
SWAV
SynMap2
SynteBase and SynteView
Synteny Explorer
TFmotifView
Two Sample Logo
UCSC Genome Browser
Variant View
VCF Plotein
Vials
Vista Dot
Vista Synteny
VistaPoint
WashU Epigenome Browser
WebLogo
Multiple Scales
A multiple scale visualization allows for visualizing data from multiple perspectives/sizes at once. This can be useful for something as large as a genome, particularly being able to view individual genes as well as the genome on a whole, as scaling would allow.
25 tools