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Scales
Single Scale
Single scale visualizations display a genome from a single perspective - one size. However, some single scale visualizations provide a zooming interaction, which allows the user to expand or shrink the genome view.

83 tools
3D Genome Browser

3dViewer

AliView

Alvis

Apollo

BactoGenie

BedSect

CEpBrowser

CGView

CGView Server

Cinteny

Circos

Civi

ClicO Free Service

CNVkit

Combo

CRISPResso2

Dalliance

Deep Motif Dashboard

deepTools Heatmap

DNAPlotter

EaSeq

Edgar Genome Browser

Edgar Synteny Plots

EnrichedHeatmap

EpiViz

Galaxy HiCExplorer

Genome Annotator Light (GAL)

GenomeRing

GenomeView

genoPlotR

GenPlay

Gepard

ggBio

Gosling

GView

HilbertCurve

HilbertVis

HUGIn

IRScope

J-Circos

JalView

JBrowse

JuiceBox

Lollipop Plot cBio

MAGI

MEXPRESS

MGcV

MicroScope

MSAViewer

NCBI Genome Viewer

ngs.plot

Oviz-Bio

pLogo

PSU 3D Genome Browser

ReadXplorer

RIdeogram

Rondo

Sashimi Plot

Savant Genome Browser 2

SCGV

Sequence Bundles

Sequence Surveyor

Spatial DB

SpliceGrapher

SplicePlot

SpliceSeq

svist4get

SWAV

SynMap2

SynteBase and SynteView

Synteny Explorer

TFmotifView

Two Sample Logo

UCSC Genome Browser

Variant View

VCF Plotein

Vials

Vista Dot

Vista Synteny

VistaPoint

WashU Epigenome Browser

WebLogo

Multiple Scales
A multiple scale visualization allows for visualizing data from multiple perspectives/sizes at once. This can be useful for something as large as a genome, particularly being able to view individual genes as well as the genome on a whole, as scaling would allow.

25 tools