Partition
Eukaryotic genomes often consist of multiple chromosomes, which are distinct sequences. However, they are often visualized as one contiguous sequence by placing them end-to-end of each other. Some visualizations, especially when comparing genomes, treat chromosomes as separate elements. While different chromosomes are the most common reason to display a sequence in separate parts, one could imagine partitioning a sequence based on other factors too, such as partitioning it in equally sized subsequences to show the entire sequence in multiple rows (similar to space-filling layouts).
Contiguous
Segments of the genome, typically individual chromosomes, are joined together end-to-end.

59 tools
3dViewer

Alvis

Apollo

BactoGenie

BedSect

Circos

Civi

ClicO Free Service

CNVkit

Cooler

CRAMER

CRISPResso2

Deep Motif Dashboard

DNAPlotter

Edgar Genome Browser

Edgar Synteny Plots

Galaxy HiCExplorer

Genome Annotator Light (GAL)

GenomeRing

Gepard

ggBio

Gosling

Gremlin

HiGlass

HilbertCurve

HilbertVis

HiPiler

IGB

Integrative Genomics Viewer

J-Circos

JuiceBox

Juiceboxjs

Lollipop Plot cBio

MEME

MEXPRESS

MGcV

MicroScope

MizBee

MSAViewer

my5c

ngs.plot

Oviz-Bio

pLogo

Rondo

Sashimi Plot

SCGV

Sequence Bundles

Sequence Surveyor

SilkDB 3.0

svist4get

SWAV

SynMap2

TFmotifView

Two Sample Logo

VCF Plotein

Vials

Vista Dot

WashU Epigenome Browser

WebLogo

Segregated
Segments of the genome, typically individual chromosomes, are displayed separately.

50 tools
3D Genome Browser

AliView

CEpBrowser

CGView

CGView Server

Cinteny

Circos

ClicO Free Service

CNVkit

Dalliance

deepTools Heatmap

Edgar Genome Browser

EnrichedHeatmap

Ensembl

EpiViz

GBrowse

GBrowse_syn

GenomeRing

GenomeView

genoPlotR

GenPlay

ggBio

GIVE

Gosling

HUGIn

IRScope

Island Viewer

JalView

JBrowse

MAGI

MochiView

NCBI Genome Viewer

NCBI Sequence Viewer

Persephone

PSU 3D Genome Browser

ReadXplorer

RIdeogram

Savant Genome Browser 2

Spatial DB

SpliceGrapher

SplicePlot

SpliceSeq

SynteBase and SynteView

Synteny Explorer

trackViewer

UCSC Genome Browser

Variant View

Vista Synteny

VistaPoint

Xena
