svist4get
https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2706-8/figures/1
Methods
linear single view single scale single focus contiguous no abstraction linear parallel arrangement no interconnection segment contiguous typeTool
| Access Format | standalone app |
| Supported Files | other |
| License | |
| Tool name | svist4get |
| Tool Link | https://bitbucket.org/artegorov/svist4get/src/master/ |
| Documentation | https://bitbucket.org/artegorov/svist4get/src/eeb5151f49c31fa887dbfc168320c63d66a17334/docs/QSGUIDE.md |
Paper
svist4get: a simple visualization tool for genomic tracks from sequencing experiments
Egorov, A.A., Sakharova, E.A., Anisimova, A.S. et al. svist4get: a simple visualization tool for genomic tracks from sequencing experiments. BMC Bioinformatics 20, 113 (2019). https://doi.org/10.1186/s12859-019-2706-8
Abstract
High-throughput sequencing often provides a foundation for experimental analyses in the life sciences. For many such methods, an intermediate layer of bioinformatics data analysis is the genomic signal track constructed by short read mapping to a particular genome assembly. There are many software tools to visualize genomic tracks in a web browser or with a stand-alone graphical user interface. However, there are only few command-line applications suitable for automated usage or production of publication-ready visualizations.