pLogo
https://www.nature.com/articles/nmeth.2646/figures/1
Methods
linear single view single scale single focus contiguous no abstraction no arrangement no interconnection point contiguous typeTool
| Access Format | web application |
| Supported Files | fasta |
| License | unavailable |
| Tool name | pLogo |
| Tool Link | https://plogo.uconn.edu/ |
| Documentation | https://plogo.uconn.edu/help/plogomap |
Paper
pLogo: a probabilistic approach to visualizing sequence motifs
O’Shea JP, Chou MF, Quader SA, Ryan JK, Church GM, Schwartz D. pLogo: a probabilistic approach to visualizing sequence motifs. Nat Methods. Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved.; 2013;10: 1211.
Abstract
Methods for visualizing protein or nucleic acid motifs have traditionally relied upon residue frequencies to graphically scale character heights. We describe the pLogo, a motif visualization in which residue heights are scaled relative to their statistical significance. A pLogo generation tool is publicly available at http://plogo.uconn.edu/ and supports real-time conditional probability calculations and visualizations.