AliView

http://ormbunkar.se/aliview/#top

Methods

linear single view single scale single focus segregated partial abstraction no arrangement between interconnection point contiguous type

Tool

Access Format standalone app
Supported Files fasta other
License GNU General Public License, version 3.0 (GPLv3)
Tool name

AliView
Tool Link http://ormbunkar.se/aliview/
Documentation http://ormbunkar.se/aliview/#TOP_HELP

Paper

AliView: a fast and lightweight alignment viewer and editor for large datasets

Larsson A. AliView: a fast and lightweight alignment viewer and editor for large datasets. Bioinformatics. academic.oup.com; 2014;30: 3276–3278.

Abstract

Summary: AliView is an alignment viewer and editor designed to meet the requirements of next-generation sequencing era phylogenetic datasets. AliView handles alignments of unlimited size in the formats most commonly used, i.e. FASTA, Phylip, Nexus, Clustal and MSF. The intuitive graphical interface makes it easy to inspect, sort, delete, merge and realign sequences as part of the manual filtering process of large datasets. AliView also works as an easy-to-use alignment editor for small as well as large datasets. Availability and implementation: AliView is released as open-source software under the GNU General Public License, version 3.0 (GPLv3), and is available at GitHub ( www.github.com/AliView ). The program is cross-platform and extensively tested on Linux, Mac OS X and Windows systems. Downloads and help are available at http://ormbunkar.se/aliview